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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">cardiotomsk</journal-id><journal-title-group><journal-title xml:lang="ru">Сибирский журнал клинической и экспериментальной медицины</journal-title><trans-title-group xml:lang="en"><trans-title>Siberian Journal of Clinical and Experimental Medicine</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2713-2927</issn><issn pub-type="epub">2713-265X</issn><publisher><publisher-name>TSU publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.29001/2073-8552-2021-36-4-156-163</article-id><article-id custom-type="elpub" pub-id-type="custom">cardiotomsk-1300</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>ЭКСПЕРИМЕНТАЛЬНЫЕ ИССЛЕДОВАНИЯ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>EXPERIMENTAL STUDIES</subject></subj-group></article-categories><title-group><article-title>Анализ дифференциальной экспрессии генов липидного обмена в атеросклеротических бляшках у пациентов с коронарным атеросклерозом</article-title><trans-title-group xml:lang="en"><trans-title>Analysis of differential expression of lipid metabolism genes in atherosclerotic plaques in patients with coronary atherosclerosis</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6108-1025</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шахтшнейдер</surname><given-names>Е. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Shakhtshneider</surname><given-names>E. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p> канд. мед. наук, ведущий научный сотрудник, лаборатория молекулярно-генетических исследований терапевтических заболеваний; ведущий научный сотрудник, сектор изучения моногенных форм распространенных заболеваний человека</p><p>Е-mail:  shakhtshneyderev@bionet.nsc.ru </p><p> 630089, Российская Федерация, Новосибирск, ул. Б. Богаткова, 175/1 </p><p> 630090, Российская Федерация, Новосибирск, пр. акад. Лаврентьева,10 </p></bio><bio xml:lang="en"><p> Cand. Sci. (Med.), Leading Research Scientist, Laboratory of Molecular Genetic Study of Therapeutic Diseases; Leading Research Scientist, Laboratoryof Monogenic Forms of Common Human Diseases</p><p> 175/1, B. Bogatkova str., Novosibirsk, 630089, Russian Federation </p><p> 10, Lavrentieva ave., Novosibirsk, 630090, Russian Federation </p></bio><email xlink:type="simple">2117409@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0403-545X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Иванощук</surname><given-names>Д. Е.</given-names></name><name name-style="western" xml:lang="en"><surname>Ivanoshchuk</surname><given-names>D. E.</given-names></name></name-alternatives><bio xml:lang="ru"><p> научный сотрудник, лаборатория молекулярно-генетических исследований терапевтических заболеваний; младший научный сотрудник, лаборатория молекулярной генетики человека </p><p> 630089, Российская Федерация, Новосибирск, ул. Б. Богаткова, 175/1 </p><p> 630090, Российская Федерация, Новосибирск, пр. акад. Лаврентьева,10 </p></bio><bio xml:lang="en"><p> Junior Research Scientist, Laboratory of Human Molecular Genetics; Research Scientist, Laboratory of Molecular Genetic Study of Therapeutic Diseases</p><p> 175/1, B. Bogatkova str., Novosibirsk, 630089, Russian Federation </p><p> 10, Lavrentieva ave., Novosibirsk, 630090, Russian Federation </p></bio><email xlink:type="simple">dinara2084@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-4936-8362</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Рагино</surname><given-names>Ю. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Ragino</surname><given-names>Yu. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p> д-р мед. наук, профессор, чл.-корр. РАН, главный научный сотрудник</p><p> 630089, Российская Федерация, Новосибирск, ул. Б. Богаткова, 175/1 </p></bio><bio xml:lang="en"><p> Dr. Sci. (Med.), Corresponding Member of the Russian Academy of Sciences, Professor, Chief Research Scientist</p><p> 175/1, B. Bogatkova str., Novosibirsk, 630089, Russian Federation </p></bio><email xlink:type="simple">ragino@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-5573-3100</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Фишман</surname><given-names>В. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Fishman</surname><given-names>V. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p> ведущий научный сотрудник, сектор геномных механизмов онтогенеза  </p><p> 630090, Российская Федерация, Новосибирск, пр. акад. Лаврентьева,10 </p></bio><bio xml:lang="en"><p> Dr. Sci. (Med.), Leading Research Scientist, Department of Genomic Mechanisms of Ontogenesis</p><p> 10, Lavrentieva ave., Novosibirsk, 630090, Russian Federation </p></bio><email xlink:type="simple">minja@bionet.nsc.ru</email><xref ref-type="aff" rid="aff-4"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3538-0280</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Полонская</surname><given-names>Я. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Polonskaya</surname><given-names>Ya. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p> канд. мед. наук, старший научный  сотрудник, лаборатория клинических биохимических и гормональных исследований терапевтических заболеваний</p><p> 630089, Российская Федерация, Новосибирск, ул. Б. Богаткова, 175/1 </p></bio><bio xml:lang="en"><p> Cand. Sci. (Med.), Senior Research Scientist, Laboratory of Clinical Biochemical and Hormonal Study of Therapeutic Diseases</p><p> 175/1, B. Bogatkova str., Novosibirsk, 630089, Russian Federation </p></bio><email xlink:type="simple">yana-polonskaya@yandex.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2268-4186</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Каштанова</surname><given-names>Е. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Kashtanova</surname><given-names>E. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p> д-р биол. наук, старший научный сотрудник, лаборатория клинических биохимических и гормональных исследований терапевтических заболеваний</p><p> 630089, Российская Федерация, Новосибирск, ул. Б. Богаткова, 175/1 </p></bio><bio xml:lang="en"><p> Dr. Sci. (Biol.), Senior Research Scientist, Laboratory of Clinical Biochemical and Hormonal Study of Therapeutic Diseases </p><p> 175/1, B. Bogatkova str., Novosibirsk, 630089, Russian Federation </p></bio><email xlink:type="simple">elekastanova@yandex.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-9818-8678</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Чернявский</surname><given-names>А. М.</given-names></name><name name-style="western" xml:lang="en"><surname>Chernyavsky</surname><given-names>A. M.</given-names></name></name-alternatives><bio xml:lang="ru"><p> д-р мед. наук, профессор, руководитель Центра хирургии аорты, коронарных и периферических артерий</p><p>630055, Российская Федерация, Новосибирск, ул. Речкуновская, 15</p></bio><bio xml:lang="en"><p> PhD, MD, Professor, Honorary Scientist of the Russian Federation, Head of the Center for Aortic and Coronary Artery Surgery</p><p> 15, Rechkunovskaya str., Novosibirsk, 630055, Russian Federation </p></bio><email xlink:type="simple">amchern@mail.ru</email><xref ref-type="aff" rid="aff-5"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3712-1258</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Мурашов</surname><given-names>И. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Murashov</surname><given-names>I. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p> научный сотрудник, лаборатория патоморфологии</p><p>630055, Российская Федерация, Новосибирск, ул. Речкуновская, 15</p></bio><bio xml:lang="en"><p> junior researcher pathomorphology and electron microscopy laboratories</p><p> 15, Rechkunovskaya str., Novosibirsk, 630055, Russian Federation </p></bio><email xlink:type="simple">ivmurashov@gmail.com</email><xref ref-type="aff" rid="aff-6"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-9425-413X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Воевода</surname><given-names>М. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Voevoda</surname><given-names>M. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p> д-р мед. наук, профессор, академик РАН, заведующий отделом молекулярной генетики человека  </p><p> 630090, Российская Федерация, Новосибирск, пр. акад. Лаврентьева,10 </p></bio><bio xml:lang="en"><p> a member of the Russian Academy of Sciences, PhD, MD, ScD, Professor, head of the Department of Human Molecular Genetics</p><p> 10, Lavrentieva ave., Novosibirsk, 630090, Russian Federation </p></bio><email xlink:type="simple">mvoevoda@yandex.ru</email><xref ref-type="aff" rid="aff-7"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Научно-исследовательский институт терапии и профилактической медицины – филиал Института цитологии и генетики Сибирского отделения Российской академии наук;&#13;
Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Research Institute of Internal and Preventive Medicine – Branch of the&#13;
Institute of Cytology and Genetics;&#13;
Institute of Cytology and Genetics </institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Научно-исследовательский институт терапии и профилактической медицины – филиал Института цитологии и генетики Сибирского отделения Российской академии наук;&#13;
Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Institute of Cytology and Genetics;&#13;
Research Institute of Internal and Preventive Medicine – Branch of the Institute of Cytology and Genetics</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Научно-исследовательский институт терапии и профилактической медицины – филиал Института цитологии и генетики Сибирского отделения Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Research Institute of Internal and Preventive Medicine – Branch of the Institute of Cytology and Genetics </institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru"><institution>Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Institute of Cytology and Genetics</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-5"><aff xml:lang="ru"><institution>Национальный медицинский исследовательский центр имени академика Е.Н. Мешалкина Министерства здравоохранения Российской Федерации</institution><country>Россия</country></aff><aff xml:lang="en"><institution>National Medical Research Center named after Academician E.N. Meshalkin</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-6"><aff xml:lang="ru"><institution>Национальный медицинский исследовательский центр имени академика Е.Н. Мешалкина Министерства здравоохранения Российской Федерации</institution><country>Россия</country></aff><aff xml:lang="en"><institution>National Medical Research Center named after Academician E.N. Meshalkin </institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-7"><aff xml:lang="ru"><institution>Федеральный исследовательский центр Институт цитологии и генетики Сибирского отделения Российской академии наук</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Institute of Cytology and Genetics </institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2021</year></pub-date><pub-date pub-type="epub"><day>05</day><month>01</month><year>2022</year></pub-date><volume>36</volume><issue>4</issue><fpage>156</fpage><lpage>163</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Шахтшнейдер Е.В., Иванощук Д.Е., Рагино Ю.И., Фишман В.С., Полонская Я.В., Каштанова Е.В., Чернявский А.М., Мурашов И.С., Воевода М.И., 2022</copyright-statement><copyright-year>2022</copyright-year><copyright-holder xml:lang="ru">Шахтшнейдер Е.В., Иванощук Д.Е., Рагино Ю.И., Фишман В.С., Полонская Я.В., Каштанова Е.В., Чернявский А.М., Мурашов И.С., Воевода М.И.</copyright-holder><copyright-holder xml:lang="en">Shakhtshneider E.V., Ivanoshchuk D.E., Ragino Y.I., Fishman V.S., Polonskaya Y.V., Kashtanova E.V., Chernyavsky A.M., Murashov I.S., Voevoda M.I.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.sibjcem.ru/jour/article/view/1300">https://www.sibjcem.ru/jour/article/view/1300</self-uri><abstract><p>Цель: выполнить анализ дифференциальной экспрессии генов липидного обмена в атеросклеротических бляшках разных типов у пациентов с коронарным атеросклерозом.Материал и методы. Исследование выполнено на образцах атеросклеротических бляшек пациентов с коронарным атеросклерозом без острого коронарного синдрома со стабильной стенокардией напряжения II–IV функционального класса (ФК) в возрасте 45–65 лет. Коронарный атеросклероз подтвержден коронароангиографией. Забор тканей атеросклеротической бляшки проведен интраоперационно при наличии показаний. Полногеномное секвенирование рибонуклеиновой кислоты (РНК) выполнено с использованием Illumina’s TruSeq RNA Sample Preparation Kit (Illumina, USA).Результаты. Статистически значимые различия в экспрессии генов между разными типами бляшек были отмечены для LDLR, APOB, PCSK9, LDLRAP1, LIPA, STAP1, ABCA1, APOA1, APOE, LPL, SCARВ1 и SREBF2. Наблюдалось 8-кратное статистически значимое увеличение экспрессии гена APOE (p &lt; 0,0001) в нестабильных атеросклеротических бляшках дистрофически-некротического вида. В стабильных атеросклеротических бляшках отмечалось 8-кратное статистически значимое увеличение экспрессии генов LDLR и APOB (p &lt; 0,0001). Не было получено статистически значимых различий в изменении экспрессии генов ABCG5, ABCG8, APOC3, CETP, CLPS, CYP7A1 и PNPLA5.Заключение. Исследование показало различия в активности отдельных генов липидного обмена в атеросклеротических бляшках разных типов у пациентов с коронарным атеросклерозом. Полученные данные могут стать основой для разработки тест-систем с целью прогнозирования развития атеросклеротического процесса и его осложнений.</p></abstract><trans-abstract xml:lang="en"><p>Aim. The goal of the study was to analyze the differential expression of lipid metabolism-related genes in the atherosclerotic plaques of different types in patients with coronary atherosclerosis.Material and Methods. The study was performed on the specimens of atherosclerotic plaques in 45–65-year-old patients with coronary atherosclerosis with stable exertional angina functional class II-IV without acute coronary syndrome. Coronary atherosclerosis was verified by coronary angiography. Atherosclerotic plaque tissue was sampled intraoperatively when indicated. Whole-genome sequencing of ribonucleic acid (RNA) was performed using the TruSeq RNA Sample Preparation Kit (Illumina, USA).Results. We analyzed the differences in the expression of 12 genes including LDLR, APOB, PCSK9, LDLRAP1, LIPA, STAP1, ABCA1, APOA1, APOE, LPL, SCARB1, and SREBF2 depending on the type of atherosclerotic plaques. The expression level of APOE gene was eight times higher in unstable atherosclerotic plaques of dystrophic-necrotic type (p &lt; 0.0001). The expression levels of LDLR and APOB genes were eight times higher in stable atherosclerotic plaques (p &lt; 0.0001). We did not find differences in the expression levels of the ABCG5, ABCG8, APOC3, CETP, CLPS, CYP7A1, and PNPLA5 genes.Conclusion. The study showed the differences in the activity of individual metabolism-related genes in the atherosclerotic plaques of different types in patients with coronary atherosclerosis. Obtained data may become the basis for the development of test systems aimed at predicting the development of atherosclerotic process and its complications.</p></trans-abstract><kwd-group xml:lang="ru"><kwd>атеросклеротические бляшки</kwd><kwd>экспрессия генов</kwd><kwd>ген APOE</kwd><kwd>ген APOC1</kwd><kwd>ген LDLR</kwd><kwd>ген APOB</kwd><kwd>гены липидного метаболизма</kwd><kwd>транскриптом</kwd></kwd-group><kwd-group xml:lang="en"><kwd>atherosclerotic plaques</kwd><kwd>expression of genes</kwd><kwd>gene APOE</kwd><kwd>gene APOC1</kwd><kwd>gene LDLR</kwd><kwd>gene APOB</kwd><kwd>lipid metabolism-related genes</kwd><kwd>transcriptome</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">биохимические и гистологические исследования выполнены при финансовой поддержке гранта Президента Российской Федерации по поддержке ведущих научных школ НШ- 2595.2020.7, молекулярно-генетические исследования выполнены при поддержке гранта РФФИ № 19-015-00458</funding-statement><funding-statement xml:lang="en">Biochemical and histological studies were carried out with the financial support of the grant of the President of the Russian Federation for the support of leading scientific schools НШ- 2595.2020.7. 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