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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">cardiotomsk</journal-id><journal-title-group><journal-title xml:lang="ru">Сибирский журнал клинической и экспериментальной медицины</journal-title><trans-title-group xml:lang="en"><trans-title>Siberian Journal of Clinical and Experimental Medicine</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2713-2927</issn><issn pub-type="epub">2713-265X</issn><publisher><publisher-name>TSU publishing</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.29001/2073-8552-2025-40-4-81-89</article-id><article-id custom-type="elpub" pub-id-type="custom">cardiotomsk-2912</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>КЛИНИЧЕСКИЕ ИССЛЕДОВАНИЯ</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>CLINICAL STUDIES</subject></subj-group></article-categories><title-group><article-title>Идентификация клинически значимых вариантов генов эмбрионального развития сердечно-сосудистой системы при спорадической аневризме восходящего отдела и «бычьей дуге» аорты</article-title><trans-title-group xml:lang="en"><trans-title>Identification of clinically significant variants in genes of cardiovascular embryonic development in sporadic ascending aortic aneurysm and “bovine aortic arch”</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9527-7015</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Гончарова</surname><given-names>И. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Goncharova</surname><given-names>I. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Гончарова Ирина Александровна канд. биол. наук, научный сотрудник, лаборатория популяционной генетики, НИИ медицинской генетики Томского НИМЦ.</p><p>634050, Томск, ул. Набережная реки Ушайки, 10</p></bio><bio xml:lang="en"><p>Irina A. Goncharova - Cand. Sci. (Biol.), Research Scientist, Laboratory of Population Genetics, Research Institute of Medical Genetics, Tomsk NRMC.</p><p>10, Naberezhnaya Ushaiki str., Tomsk, 634050</p></bio><email xlink:type="simple">irina.goncharova@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2201-350X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Панфилов</surname><given-names>Д. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Panfilov</surname><given-names>D. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Панфилов Дмитрий Сергеевич д-р мед. наук, старший научный сотрудник, отделение сердечно-сосудистой хирургии, НИИ кардиологии Томского НИМЦ.</p><p>634012, Томск, ул. Киевская, 111а</p></bio><bio xml:lang="en"><p>Dmitri S. Panfilov - Dr. Sci. (Med.), Senior Research Scientist, Department of Cardiovascular Surgery, Cardiology Research Institute, Tomsk NRMC.</p><p>111a, Kievskaya str., Tomsk, 634012</p></bio><email xlink:type="simple">pand2006@yandex.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-3226-1750</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Слепцов</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Sleptcov</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Слепцов Алексей Анатольевич канд. мед. наук, научный сотрудник, лаборатория популяционной генетики, НИИ медицинской генетики Томского НИМЦ.</p><p>634050, Томск, ул. Набережная реки Ушайки, 10</p></bio><bio xml:lang="en"><p>Sleptsov A. Aleksei - Cand. Sci. (Med.), Research Scientist, Laboratory of Population Genetics, Research Institute of Medical Genetics, Tomsk NRMC.</p><p>10, Naberezhnaya Ushaiki str., Tomsk, 634050</p></bio><email xlink:type="simple">alexei.sleptcov@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0037-2205</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шипулина</surname><given-names>С. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Shipulina</surname><given-names>S. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Шипулина София Александровна - ассистент, кафедра морфологии и общей патологии, СибГМУ Минздрава России.</p><p>634050, Томск, Московский тракт, 2</p></bio><bio xml:lang="en"><p>Sofia A. Shipulina - Assistant Professor, Department of Morphology and General Pathology, SSMU.</p><p>2, Moskovskiy trakt, Tomsk, 634050</p></bio><email xlink:type="simple">belyaeva.sa@ssmu.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6568-6339</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Зарубин</surname><given-names>А. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Zarubin</surname><given-names>A. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Зарубин Алексей Андреевич - канд. мед. наук, младший научный сотрудник, лаборатория популяционной генетики, НИИ медицинской генетики Томского НИМЦ.</p><p>634050, Томск, ул. Набережная реки Ушайки, 10</p></bio><bio xml:lang="en"><p>Alexey A. Zarubin - Cand. Sci. (Med.), Junior Research Scientist, Laboratory of Population Genetics, Research Institute of Medical Genetics, Tomsk NRMC.</p><p>10, Naberezhnaya Ushaiki str., Tomsk, 634050</p></bio><email xlink:type="simple">aleksei.zarubin@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6133-8986</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Бабушкина</surname><given-names>Н. П.</given-names></name><name name-style="western" xml:lang="en"><surname>Babushkina</surname><given-names>N. P.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Бабушкина Надежда Петровна - канд. мед. наук, ученый секретарь; старший научный сотрудник, лаборатория популяционной генетики, НИИ медицинской генетики Томского НИМЦ.</p><p>634050, Томск, ул. Набережная реки Ушайки, 10</p></bio><bio xml:lang="en"><p>Nadezhda P. Babushkina - Cand. Sci. (Biol.), Research Scientist, Laboratory of Population Genetics, Research Institute of Medical Genetics, Tomsk NRMC.</p><p>10, Naberezhnaya Ushaiki str., Tomsk, 634050</p></bio><email xlink:type="simple">nad.babushkina@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7969-7020</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Валиахметов</surname><given-names>Н. Р.</given-names></name><name name-style="western" xml:lang="en"><surname>Valiakhmetov</surname><given-names>N. R.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Валиахметов Наиль Раушанович - канд. мед. наук, младший научный сотрудник, лаборатория популяционной генетики, НИИ медицинской генетики Томского НИМЦ.</p><p>634050, Томск, ул. Набережная реки Ушайки, 10</p></bio><bio xml:lang="en"><p>Nail R. Valiakhmetov - Cand. Sci. (Med.), Junior Research Scientist, Laboratory of Population Genetics, Research Institute of Medical Genetics, Tomsk NRMC.</p><p>10, Naberezhnaya Ushaiki str., Tomsk, 634050</p></bio><email xlink:type="simple">nail.valiakhmetov@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Саушкин</surname><given-names>В. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Saushkin</surname><given-names>V. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>634012, Томск, ул. Киевская, 111а</p></bio><bio xml:lang="en"><p>111a, Kievskaya str., Tomsk, 634012</p></bio><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-7553-001X</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Лелик</surname><given-names>Е. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Lelik</surname><given-names>E. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Лелик Евгения Владимировна - канд. мед. наук, младший научный сотрудник, врач-кардиолог, отделение сердечно-сосудистой хирургии, НИИ кардиологии Томского НИМЦ.</p><p>634012, Томск, ул. Киевская, 111а</p></bio><bio xml:lang="en"><p>Eugenia V. Lelik - Cand. Sci. (Med.), Junior Research Scientist, Cardiologist, Department of Cardiovascular Surgery, Cardiology Research Institute.</p><p>111a, Kievskaya str., Tomsk, 634012</p></bio><email xlink:type="simple">eva00@list.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5912-8752</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Петракова</surname><given-names>Е. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Petrakova</surname><given-names>E. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Петракова Елизавета Анатольевна - аспирант, врач-сердечнососудистый хирург, отделение сердечно-сосудистой хирургии, НИИ кардиологии Томского НИМЦ.</p><p>634012, Томск, ул. Киевская, 111а</p></bio><bio xml:lang="en"><p>Elizaveta A. Petrakova - Graduate Student, Senior Research Scientist, Cardiovascular Surgeon, Department of Cardiovascular Surgery, Cardiology Research Institute.</p><p>111a, Kievskaya str., Tomsk, 634012</p></bio><email xlink:type="simple">lizaveta_petrakova@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0217-7737</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Козлов</surname><given-names>Б. Н.</given-names></name><name name-style="western" xml:lang="en"><surname>Kozlov</surname><given-names>B. N.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Козлов Борис Николаевич - д-р мед. наук, профессор, заведующий отделением сердечно-сосудистой хирургии, НИИ кардиологии Томского НИМЦ.</p><p>634012, Томск, ул. Киевская, 111а</p></bio><bio xml:lang="en"><p>Boris N. Kozlov - Dr. Sci. (Med.), Professor, Head of the Department of Cardiovascular Surgery, Cardiology Research Institute, Tomsk NRMC.</p><p>111a, Kievskaya str., Tomsk, 634012</p></bio><email xlink:type="simple">bnkozlov@yandex.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0673-4094</contrib-id><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Назаренко</surname><given-names>М. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Nazarenko</surname><given-names>M. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Назаренко Мария Сергеевна - д-р мед. наук, руководитель лаборатории популяционной генетики, ведущий научный сотрудник, лаборатория популяционной генетики, НИИ медицинской генетики Томского НИМЦ.</p><p>634050, Томск, ул. Набережная реки Ушайки, 10</p></bio><bio xml:lang="en"><p>Maria A. Nazarenko - Dr. Sci. (Med.), Senior Research Scientist, Head of Laboratory of Population Genetics, Research Institute of Medical Genetics, Tomsk NRMC.</p><p>10, Naberezhnaya Ushaiki str., Tomsk, 634050</p></bio><email xlink:type="simple">maria.nazarenko@medgenetics.ru</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Научно-исследовательский институт медицинской генетики, Томский национальный исследовательский медицинский центр Российской академии наук (НИИ медицинской генетики Томского НИМЦ)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Research Institute of Medical Genetics, Tomsk National Research Medical Center, Russian Academy of Sciences (Research Institute of Medical Genetics, Tomsk NRMC)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Научно-исследовательский институт кардиологии, Томский национальный исследовательский медицинский центр Российской академии наук (НИИ кардиологии Томского НИМЦ)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Cardiology Research Institute, Tomsk National Research Medical Center of the Russian Academy of Sciences (Cardiology Research Institute, Tomsk NRMC)</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Сибирский государственный медицинский университет Министерства здравоохранения Российской Федерации (СибГМУ Минздрава России)</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Siberian State Medical University of the Ministry of Health of the Russian Federation (SSMU)</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2025</year></pub-date><pub-date pub-type="epub"><day>12</day><month>12</month><year>2025</year></pub-date><volume>40</volume><issue>4</issue><fpage>81</fpage><lpage>89</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Гончарова И.А., Панфилов Д.С., Слепцов А.А., Шипулина С.А., Зарубин А.А., Бабушкина Н.П., Валиахметов Н.Р., Саушкин В.В., Лелик Е.В., Петракова Е.А., Козлов Б.Н., Назаренко М.С., 2025</copyright-statement><copyright-year>2025</copyright-year><copyright-holder xml:lang="ru">Гончарова И.А., Панфилов Д.С., Слепцов А.А., Шипулина С.А., Зарубин А.А., Бабушкина Н.П., Валиахметов Н.Р., Саушкин В.В., Лелик Е.В., Петракова Е.А., Козлов Б.Н., Назаренко М.С.</copyright-holder><copyright-holder xml:lang="en">Goncharova I.A., Panfilov D.S., Sleptcov A.A., Shipulina S.A., Zarubin A.A., Babushkina N.P., Valiakhmetov N.R., Saushkin V.V., Lelik E.V., Petrakova E.A., Kozlov B.N., Nazarenko M.S.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://www.sibjcem.ru/jour/article/view/2912">https://www.sibjcem.ru/jour/article/view/2912</self-uri><abstract><sec><title>Введение</title><p>Введение. Аномалии дуги аорты, в большей степени «бычья дуга» аорты, могут обусловливать развитие аневризмы восходящей аорты. Наблюдается высокий коэффициент наследуемости данной патологии, однако молекулярно-генетические исследования единичны. Поскольку «бычья дуга» является одним из вариантов развития дуги аорты и магистральных сосудов в процессе эмбриогенеза, возможно, что данная аномалия связана с генами, кодирующими белки, вовлеченные в эмбриональное развитие сердечно-сосудистой системы.</p></sec><sec><title>Цель</title><p>Цель: поиск редких клинически значимых вариантов генов эмбрионального развития сердечно-сосудистой системы у больных со спорадической аневризмой восходящей аорты с дугой аорты нормального строения и в сочетании с «бычьей дугой». Материал и методы. В исследование включены 42 пациента со спорадической формой аневризмы восходящей аорты, в том числе 11 человек с «бычьей дугой» аорты. Анализ клинического экзома выполнялся на основании данных секвенирования ДНК-библиотек Clinical Exome Solution (Sophia Genetics, Швейцария) на приборе NextSeq 500 (Illumina, США). Поиск редких клинически значимых вариантов (частота минорного аллеля &lt; 1%) проводился в экзонах и прилегающих к ним интронах 120 генов эмбрионального развития сердечно-сосудистой системы. Валидация выявленных вариантов выполнялась секвенированием по Сэнгеру.</p></sec><sec><title>Результаты</title><p>Результаты. У больных с аневризмой аорты и «бычьей дугой» выявлены следующие клинически значимые варианты: патогенный вариант c.610-2A&gt;G гена CCDC39, который представляет собой однонуклеотидную замену, приводящую к потере акцепторного сайта сплайсинга (ΔScore = 0,97 Spliceailookup), и вариант с неопределенным клиническим значением (VUS – variant of uncertain clinical significance) c.2564T&gt;C в гене ANKS6, имеющий высокие показатели патогенности по шкалам CADD (Phred = 28,3) и AlphaMissense (0,972). В группе больных с аневризмой аорты с нормальной анатомией супрааортальных сосудов выявлен вероятно патогенный вариант с.1151T&gt;C гена ACVR2B (AlphaMissense = 0,966). Среди 38 генов, в последовательности которых обнаружены VUS в обеих группах больных, белковые продукты 17 (44,7%) вовлечены в функционирование ресничек и микротрубочек, а белки, кодируемые генами MKS1, CCDC40, DNAAF1, ANKS6, CCDC39, DNAH5, DNAAF3, отвечают и за развитие сердечно-сосудистой системы.</p></sec><sec><title>Заключение</title><p>Заключение. В развитие спорадической формы аневризмы восходящей аорты в сочетании с «бычьей дугой» вносят вклад редкие клинически значимые варианты генов CCDC39 и ANKS6, ответственные за функционирование первичных ресничек. При наличии дуги нормального строения важную роль играют варианты гена ACVR2B, принадлежащего к суперсемейству сигнальных белков TGF-бета.</p></sec></abstract><trans-abstract xml:lang="en"><sec><title>Introduction</title><p>Introduction. Aortic arch anomalies, especially the “bovine arch”, can cause the development of an ascending aortic aneurysm. There is a high coefficient of heritability of this pathology, however, genetic studies are rare. Since the “bovine arch” is one of the variants of the development of the aortic arch and large vessels during embryogenesis, this pathology may be associated with genes encoding proteins involved in the embryonic development of the cardiovascular system.</p></sec><sec><title>Aim</title><p>Aim: To identify rare, clinically significant variants of genes of cardiovascular embryonic development in patients with sporadic ascending aortic aneurysm and a “bovine arch”.</p></sec><sec><title>Material and Methods</title><p>Material and Methods. The study included 42 patients with a sporadic form of ascending aortic aneurysm, including 11 patients with a “bovine arch”. Analysis of the clinical exome was performed based on DNA sequencing data using Clinical Exome Solution (Sophia Genetics, Switzerland) and NextSeq 500 genetic sequencer (Illumina, USA). The search for rare, clinically significant variants (minor allele frequency &lt;1%) was carried out in exons and adjacent introns of 120 genes of embryonic development of the cardiovascular system. Validation of identified variants was performed using Sanger sequencing.</p></sec><sec><title>Results</title><p>Results. In patients with aortic aneurysm and “bovine arch”, the following clinically significant variants were identified: the pathogenic variant c.610-2A&gt;G of the CCDC39 gene, which is a single-nucleotide substitution leading to the loss of the acceptor splice site (ΔScore = 0.97 Spliceailookup) and a variant of uncertain clinical significance (VUS) c.2564T&gt;C in the ANKS6 gene, which has high pathogenicity rates on the CADD (Phred = 28.3) and AlphaMissense (0.972) scales. A likely pathogenic variant c.1151T&gt;C of the ACVR2B gene was identified in the group of patients with aortic aneurysm without supraaortic vessels anomaly (AlphaMissense = 0.966). Among the 38 genes whose sequences revealed VUS in both groups of patients, the protein products of 17 (44.7%) are involved in the functioning of cilia and microtubules, and the proteins encoded by the genes MKS1, CCDC40, DNAAF1, ANKS6, CCDC39, DNAH5, DNAAF3 are also responsible for the development of the cardiovascular system.</p></sec><sec><title>Conclusion</title><p>Conclusion. Rare, clinically significant variants in the CCDC39 and ANKS6 genes, which are crucial for primary cilia function, contribute to the development of sporadic ascending aortic aneurysm in combination with a “bull’s arch.” When a normal aortic arch is present, variants in the ACVR2B gene, belonging to the TGF-beta signaling protein superfamily, play an important role.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>аневризма восходящей аорты</kwd><kwd>«бычья дуга»</kwd><kwd>клинически значимые генетические варианты</kwd><kwd>гены эмбрионального развития сердечно-сосудистой системы</kwd><kwd>CCDC39</kwd><kwd>ANKS6</kwd><kwd>ACVR2B</kwd></kwd-group><kwd-group xml:lang="en"><kwd>ascending aortic aneurysm</kwd><kwd>“bovine arch”</kwd><kwd>clinically significant genetic variants</kwd><kwd>genes of embryonic development of the cardiovascular system</kwd><kwd>CCDC39</kwd><kwd>ANKS6</kwd><kwd>ACVR2B</kwd></kwd-group><funding-group><funding-statement xml:lang="ru">работа выполнена в рамках Государственного задания Министерства науки и высшего образования № 122020300041-7</funding-statement><funding-statement xml:lang="en">the study was carried out within the state task of the Ministry of Science and Higher Education No. 122020300041-7</funding-statement></funding-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Yousef S., Singh S., Alkukhun A., Alturkmani B., Mori M., Chen J. et al. 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